{
  "schema_version": 1,
  "base_url": "https://snipe-dbs.tail5bcf5f.ts.net",
  "shared": {
    "contamination": [
      {
        "slug": "eukaryotes",
        "title": "Eukaryotes pooled",
        "file": "shared/contamination/signatures/eukaryotes-k51-s10000.snipesig",
        "bytes": 46375079,
        "sha256": "7d88aa96994fcbe777d624102a69ed98cc7e463437abff24682686533128bdb0",
        "k1": 51,
        "k2": 0,
        "scale": 10000,
        "is_edgemer": false,
        "signature_type": "Sample",
        "snipe_name": "EUK-snipesample",
        "unique_k1_count": 7114221,
        "created": "2026-07-26T18:49:38.227611773+00:00",
        "source_inputs": [
          "/home/mabuelanin/test-snipe/QCBUNDLE/EUKARYOTES-K51_S10K-POOLED.zip"
        ],
        "scope": "shared",
        "group": "contamination",
        "snipe": {
          "format": "snipe_v2",
          "metadata": {
            "software": "snipe",
            "version": "2.0.0",
            "created": "2026-07-26T18:49:38.227611773+00:00",
            "generated_by": "snipe K1-only v2.0.0",
            "input": [
              "/home/mabuelanin/test-snipe/QCBUNDLE/EUKARYOTES-K51_S10K-POOLED.zip"
            ],
            "name": "EUK-snipesample",
            "signature_type": "Sample",
            "filename": "/home/mabuelanin/test-snipe/QCBUNDLE/EUKARYOTES-K51_S10K-POOLED.zip"
          },
          "params": {
            "k1_length": 51,
            "k2_length": 0,
            "scale": 10000,
            "hash_threshold": 1844674407370955
          },
          "stats": {
            "unique_k1_count": 7114221,
            "total_k1_abundance": 7572085,
            "average_k1_abundance": 1.0643589790083834,
            "unique_k2_count": 0,
            "total_k2_abundance": 0,
            "average_k2_abundance": 0.0,
            "unique_edgemers_count": 0,
            "total_edgemer_abundance": 0,
            "average_edgemer_abundance": 0.0,
            "failed_k2_edgemers_count": 0,
            "failed_k2_edgemers_abundance": 0,
            "k1_checksum": "de043f646f2d94aea17dfa9a455a0df9",
            "k2_checksum": ""
          }
        },
        "url": "https://snipe-dbs.tail5bcf5f.ts.net/shared/contamination/signatures/eukaryotes-k51-s10000.snipesig"
      },
      {
        "slug": "gtdb-220",
        "title": "GTDB r220 pooled (bacteria/archaea)",
        "file": "shared/contamination/signatures/gtdb-220-k51-s10000.snipesig",
        "bytes": 257010044,
        "sha256": "6ba4081b07a76b2e44174c8f189ccc7ce840362807d8f627566bacfcf7cb136f",
        "k1": 51,
        "k2": 0,
        "scale": 10000,
        "is_edgemer": false,
        "signature_type": "Sample",
        "snipe_name": "GTDB-220-K51_S10K-POOLED",
        "unique_k1_count": 42516157,
        "created": "2026-07-26T18:49:19.258101785+00:00",
        "source_inputs": [
          "/home/mabuelanin/test-snipe/QCBUNDLE/GTDB-220-K51_S10K-POOLED.zip"
        ],
        "scope": "shared",
        "group": "contamination",
        "snipe": {
          "format": "snipe_v2",
          "metadata": {
            "software": "snipe",
            "version": "2.0.0",
            "created": "2026-07-26T18:49:19.258101785+00:00",
            "generated_by": "snipe K1-only v2.0.0",
            "input": [
              "/home/mabuelanin/test-snipe/QCBUNDLE/GTDB-220-K51_S10K-POOLED.zip"
            ],
            "name": "GTDB-220-K51_S10K-POOLED",
            "signature_type": "Sample",
            "filename": "/home/mabuelanin/test-snipe/QCBUNDLE/GTDB-220-K51_S10K-POOLED.zip"
          },
          "params": {
            "k1_length": 51,
            "k2_length": 0,
            "scale": 10000,
            "hash_threshold": 1844674407370955
          },
          "stats": {
            "unique_k1_count": 42516157,
            "total_k1_abundance": 42516157,
            "average_k1_abundance": 1.0,
            "unique_k2_count": 0,
            "total_k2_abundance": 0,
            "average_k2_abundance": 0.0,
            "unique_edgemers_count": 0,
            "total_edgemer_abundance": 0,
            "average_edgemer_abundance": 0.0,
            "failed_k2_edgemers_count": 0,
            "failed_k2_edgemers_abundance": 0,
            "k1_checksum": "b4f086ed06d277052a5165cff2735b66",
            "k2_checksum": ""
          }
        },
        "url": "https://snipe-dbs.tail5bcf5f.ts.net/shared/contamination/signatures/gtdb-220-k51-s10000.snipesig"
      }
    ]
  },
  "organisms": [
    {
      "name": "dog",
      "scientific_name": "Canis lupus familiaris",
      "ncbi_taxid": 9615,
      "assemblies": [
        {
          "name": "canfam3.1",
          "title": "CanFam3.1",
          "ncbi_accession": "GCF_000002285.3",
          "source_fasta": "GCF_000002285.3_CanFam3.1_genomic.fna.gz",
          "signatures": [
            {
              "slug": "exome",
              "title": "CanFam3.1 exome amplicon",
              "file": "organisms/dog/assemblies/canfam3.1/signatures/exome-k51-s10000.snipesig",
              "bytes": 70313,
              "sha256": "ec0cd7bcbeeeb1704a355aa0554ef4328243f84edd5d864e870f92c7c49dfb46",
              "k1": 51,
              "k2": 0,
              "scale": 10000,
              "is_edgemer": false,
              "signature_type": "Sample",
              "snipe_name": "canfam31_exome_k51_s10k-snipeamplicon",
              "unique_k1_count": 7709,
              "created": "2026-07-26T18:49:30.092901454+00:00",
              "source_inputs": [
                "/home/mabuelanin/test-snipe/QCBUNDLE/canfam31_exome_k51_s10k.zip"
              ],
              "scope": "assembly",
              "organism": "dog",
              "assembly": "canfam3.1",
              "snipe": {
                "format": "snipe_v2",
                "metadata": {
                  "software": "snipe",
                  "version": "2.0.0",
                  "created": "2026-07-26T18:49:30.092901454+00:00",
                  "generated_by": "snipe K1-only v2.0.0",
                  "input": [
                    "/home/mabuelanin/test-snipe/QCBUNDLE/canfam31_exome_k51_s10k.zip"
                  ],
                  "name": "canfam31_exome_k51_s10k-snipeamplicon",
                  "signature_type": "Sample",
                  "filename": "/home/mabuelanin/test-snipe/QCBUNDLE/canfam31_exome_k51_s10k.zip"
                },
                "params": {
                  "k1_length": 51,
                  "k2_length": 0,
                  "scale": 10000,
                  "hash_threshold": 1844674407370955
                },
                "stats": {
                  "unique_k1_count": 7709,
                  "total_k1_abundance": 7709,
                  "average_k1_abundance": 1.0,
                  "unique_k2_count": 0,
                  "total_k2_abundance": 0,
                  "average_k2_abundance": 0.0,
                  "unique_edgemers_count": 0,
                  "total_edgemer_abundance": 0,
                  "average_edgemer_abundance": 0.0,
                  "failed_k2_edgemers_count": 0,
                  "failed_k2_edgemers_abundance": 0,
                  "k1_checksum": "38a5c12484e2e805ca189f444869ce41",
                  "k2_checksum": ""
                }
              },
              "url": "https://snipe-dbs.tail5bcf5f.ts.net/organisms/dog/assemblies/canfam3.1/signatures/exome-k51-s10000.snipesig"
            },
            {
              "slug": "reference",
              "title": "CanFam3.1 genome reference",
              "file": "organisms/dog/assemblies/canfam3.1/signatures/reference-k51-k53-s10000.snipesig",
              "bytes": 10030755,
              "sha256": "4cb39dceaf2ede810529ff9ded6d9e636061a0937c3ba6f64ece74a84db812fe",
              "k1": 51,
              "k2": 53,
              "scale": 10000,
              "is_edgemer": true,
              "signature_type": "Reference",
              "snipe_name": "genome-canfam3.1_k51_k53_s10000",
              "unique_k1_count": 225463,
              "created": "2026-07-26T19:02:37.880850998+00:00",
              "source_inputs": [
                "GCF_000002285.3_CanFam3.1_genomic.fna.gz"
              ],
              "scope": "assembly",
              "organism": "dog",
              "assembly": "canfam3.1",
              "snipe": {
                "format": "snipe_v2",
                "metadata": {
                  "software": "snipe",
                  "version": "2.0.0",
                  "created": "2026-07-26T19:02:37.880850998+00:00",
                  "generated_by": "K-mer Sketcher v2.0.0",
                  "input": [
                    "GCF_000002285.3_CanFam3.1_genomic.fna.gz"
                  ],
                  "name": "genome-canfam3.1_k51_k53_s10000",
                  "signature_type": "Reference"
                },
                "params": {
                  "k1_length": 51,
                  "k2_length": 53,
                  "scale": 10000,
                  "hash_threshold": 1844674407370955
                },
                "stats": {
                  "unique_k1_count": 225463,
                  "total_k1_abundance": 237773,
                  "average_k1_abundance": 1.0545987589981505,
                  "unique_k2_count": 226030,
                  "total_k2_abundance": 237767,
                  "average_k2_abundance": 1.0519267353891077,
                  "unique_edgemers_count": 226030,
                  "total_edgemer_abundance": 237767,
                  "average_edgemer_abundance": 1.0519267353891077,
                  "failed_k2_edgemers_count": 6,
                  "failed_k2_edgemers_abundance": 12,
                  "k1_checksum": "77a6f545b585ba44ce21be994c27e895",
                  "k2_checksum": "80a2a37aa548794e22c53c404aba2f42"
                },
                "abundance_distribution": {
                  "min_edgemer_abundance": 1,
                  "max_edgemer_abundance": 1322,
                  "median_edgemer_abundance": 1,
                  "q1_edgemer_abundance": 1,
                  "q3_edgemer_abundance": 1
                },
                "processing_stats": {
                  "processing_time_seconds": 35.294694777,
                  "sequences_processed": 3268,
                  "sequences_skipped_length": 0,
                  "total_bases_processed": 2410976875,
                  "k1_positions_examined": 2410813475,
                  "k1_invalid_nucleotides": 19453539,
                  "k1_hashes_generated": 2391359936,
                  "k1_hashes_below_threshold": 237773,
                  "k1_hashes_above_threshold": 2391122163,
                  "k1_with_valid_extensions": 237767,
                  "k1_without_extension_space": 0,
                  "k1_with_invalid_extensions": 6,
                  "average_sequence_length": 737753.0217258262,
                  "hash_efficiency_percent": 0.009943003410758823,
                  "gc_bases": 988376321,
                  "at_bases": 1404338915,
                  "gc_content_percent": 41.3077288149136
                },
                "edgemer_header": [
                  "k1_hash",
                  "k1_abundance",
                  "k1_canonical_count",
                  "k2_hash",
                  "k2_abundance",
                  "edgemer_abundance",
                  "k1_sequence",
                  "k2_extension"
                ],
                "contig_count": 3268
              },
              "url": "https://snipe-dbs.tail5bcf5f.ts.net/organisms/dog/assemblies/canfam3.1/signatures/reference-k51-k53-s10000.snipesig"
            },
            {
              "slug": "rna",
              "title": "CanFam3.1 RNA amplicon",
              "file": "organisms/dog/assemblies/canfam3.1/signatures/rna-k51-s10000.snipesig",
              "bytes": 78790,
              "sha256": "231ae2337aadd3e2e1cf561236e9aaed40a5388f1bbe86785601ad9146d6f06c",
              "k1": 51,
              "k2": 0,
              "scale": 10000,
              "is_edgemer": false,
              "signature_type": "Sample",
              "snipe_name": "canfam31_rna_k51_s10k-snipeamplicon",
              "unique_k1_count": 8572,
              "created": "2026-07-26T18:49:30.202104010+00:00",
              "source_inputs": [
                "/home/mabuelanin/test-snipe/QCBUNDLE/canfam31_rna_k51_s10k.zip"
              ],
              "scope": "assembly",
              "organism": "dog",
              "assembly": "canfam3.1",
              "snipe": {
                "format": "snipe_v2",
                "metadata": {
                  "software": "snipe",
                  "version": "2.0.0",
                  "created": "2026-07-26T18:49:30.202104010+00:00",
                  "generated_by": "snipe K1-only v2.0.0",
                  "input": [
                    "/home/mabuelanin/test-snipe/QCBUNDLE/canfam31_rna_k51_s10k.zip"
                  ],
                  "name": "canfam31_rna_k51_s10k-snipeamplicon",
                  "signature_type": "Sample",
                  "filename": "/home/mabuelanin/test-snipe/QCBUNDLE/canfam31_rna_k51_s10k.zip"
                },
                "params": {
                  "k1_length": 51,
                  "k2_length": 0,
                  "scale": 10000,
                  "hash_threshold": 1844674407370955
                },
                "stats": {
                  "unique_k1_count": 8572,
                  "total_k1_abundance": 8572,
                  "average_k1_abundance": 1.0,
                  "unique_k2_count": 0,
                  "total_k2_abundance": 0,
                  "average_k2_abundance": 0.0,
                  "unique_edgemers_count": 0,
                  "total_edgemer_abundance": 0,
                  "average_edgemer_abundance": 0.0,
                  "failed_k2_edgemers_count": 0,
                  "failed_k2_edgemers_abundance": 0,
                  "k1_checksum": "3e48f9e45a7b409da3bf07c8976880e9",
                  "k2_checksum": ""
                }
              },
              "url": "https://snipe-dbs.tail5bcf5f.ts.net/organisms/dog/assemblies/canfam3.1/signatures/rna-k51-s10000.snipesig"
            },
            {
              "slug": "ychr",
              "title": "Dog Y chromosome v1",
              "file": "organisms/dog/assemblies/canfam3.1/signatures/ychr-k51-s10000.snipesig",
              "bytes": 7810,
              "sha256": "5d384c0364b808e4e011811259bb3449a5f95f79b29b1efcd8d29c7b7e6dbcc1",
              "k1": 51,
              "k2": 0,
              "scale": 10000,
              "is_edgemer": false,
              "signature_type": "Sample",
              "snipe_name": "dogs_ychr_v1_k51_s10k-snipeamplicon",
              "unique_k1_count": 711,
              "created": "2026-07-26T18:49:39.884804379+00:00",
              "source_inputs": [
                "/home/mabuelanin/test-snipe/QCBUNDLE/dogs_ychr_v1_k51_s10k.zip"
              ],
              "scope": "assembly",
              "organism": "dog",
              "assembly": "canfam3.1",
              "snipe": {
                "format": "snipe_v2",
                "metadata": {
                  "software": "snipe",
                  "version": "2.0.0",
                  "created": "2026-07-26T18:49:39.884804379+00:00",
                  "generated_by": "snipe K1-only v2.0.0",
                  "input": [
                    "/home/mabuelanin/test-snipe/QCBUNDLE/dogs_ychr_v1_k51_s10k.zip"
                  ],
                  "name": "dogs_ychr_v1_k51_s10k-snipeamplicon",
                  "signature_type": "Sample",
                  "filename": "/home/mabuelanin/test-snipe/QCBUNDLE/dogs_ychr_v1_k51_s10k.zip"
                },
                "params": {
                  "k1_length": 51,
                  "k2_length": 0,
                  "scale": 10000,
                  "hash_threshold": 1844674407370955
                },
                "stats": {
                  "unique_k1_count": 711,
                  "total_k1_abundance": 711,
                  "average_k1_abundance": 1.0,
                  "unique_k2_count": 0,
                  "total_k2_abundance": 0,
                  "average_k2_abundance": 0.0,
                  "unique_edgemers_count": 0,
                  "total_edgemer_abundance": 0,
                  "average_edgemer_abundance": 0.0,
                  "failed_k2_edgemers_count": 0,
                  "failed_k2_edgemers_abundance": 0,
                  "k1_checksum": "43f9a9d6ebf0be2507b34e8ba7d24c31",
                  "k2_checksum": ""
                }
              },
              "url": "https://snipe-dbs.tail5bcf5f.ts.net/organisms/dog/assemblies/canfam3.1/signatures/ychr-k51-s10000.snipesig"
            }
          ],
          "bundles": [
            {
              "schema_version": 1,
              "id": "dog/canfam3.1/qc-default-s10000",
              "title": "Dog CanFam3.1 \u2014 default QC bundle (scale 10000)",
              "organism": "dog",
              "assembly": "canfam3.1",
              "k1": 51,
              "k2": 53,
              "qc_scale": 10000,
              "signatures": {
                "reference": {
                  "slug": "reference",
                  "title": "CanFam3.1 genome reference",
                  "file": "organisms/dog/assemblies/canfam3.1/signatures/reference-k51-k53-s10000.snipesig",
                  "sha256": "4cb39dceaf2ede810529ff9ded6d9e636061a0937c3ba6f64ece74a84db812fe",
                  "bytes": 10030755,
                  "k1": 51,
                  "k2": 53,
                  "scale": 10000,
                  "url": "https://snipe-dbs.tail5bcf5f.ts.net/organisms/dog/assemblies/canfam3.1/signatures/reference-k51-k53-s10000.snipesig"
                },
                "roi": {
                  "slug": "exome",
                  "title": "CanFam3.1 exome amplicon",
                  "file": "organisms/dog/assemblies/canfam3.1/signatures/exome-k51-s10000.snipesig",
                  "sha256": "ec0cd7bcbeeeb1704a355aa0554ef4328243f84edd5d864e870f92c7c49dfb46",
                  "bytes": 70313,
                  "k1": 51,
                  "k2": 0,
                  "scale": 10000,
                  "url": "https://snipe-dbs.tail5bcf5f.ts.net/organisms/dog/assemblies/canfam3.1/signatures/exome-k51-s10000.snipesig"
                },
                "ychr": {
                  "slug": "ychr",
                  "title": "Dog Y chromosome v1",
                  "file": "organisms/dog/assemblies/canfam3.1/signatures/ychr-k51-s10000.snipesig",
                  "sha256": "5d384c0364b808e4e011811259bb3449a5f95f79b29b1efcd8d29c7b7e6dbcc1",
                  "bytes": 7810,
                  "k1": 51,
                  "k2": 0,
                  "scale": 10000,
                  "url": "https://snipe-dbs.tail5bcf5f.ts.net/organisms/dog/assemblies/canfam3.1/signatures/ychr-k51-s10000.snipesig"
                },
                "var": [
                  {
                    "slug": "gtdb-220",
                    "title": "GTDB r220 pooled (bacteria/archaea)",
                    "file": "shared/contamination/signatures/gtdb-220-k51-s10000.snipesig",
                    "sha256": "6ba4081b07a76b2e44174c8f189ccc7ce840362807d8f627566bacfcf7cb136f",
                    "bytes": 257010044,
                    "k1": 51,
                    "k2": 0,
                    "scale": 10000,
                    "url": "https://snipe-dbs.tail5bcf5f.ts.net/shared/contamination/signatures/gtdb-220-k51-s10000.snipesig"
                  },
                  {
                    "slug": "eukaryotes",
                    "title": "Eukaryotes pooled",
                    "file": "shared/contamination/signatures/eukaryotes-k51-s10000.snipesig",
                    "sha256": "7d88aa96994fcbe777d624102a69ed98cc7e463437abff24682686533128bdb0",
                    "bytes": 46375079,
                    "k1": 51,
                    "k2": 0,
                    "scale": 10000,
                    "url": "https://snipe-dbs.tail5bcf5f.ts.net/shared/contamination/signatures/eukaryotes-k51-s10000.snipesig"
                  },
                  {
                    "slug": "rna",
                    "title": "CanFam3.1 RNA amplicon",
                    "file": "organisms/dog/assemblies/canfam3.1/signatures/rna-k51-s10000.snipesig",
                    "sha256": "231ae2337aadd3e2e1cf561236e9aaed40a5388f1bbe86785601ad9146d6f06c",
                    "bytes": 78790,
                    "k1": 51,
                    "k2": 0,
                    "scale": 10000,
                    "url": "https://snipe-dbs.tail5bcf5f.ts.net/organisms/dog/assemblies/canfam3.1/signatures/rna-k51-s10000.snipesig"
                  }
                ]
              }
            }
          ],
          "scales": [
            10000
          ]
        }
      ]
    }
  ]
}
